LMI Pathobios

Training in bioinformatics 2016

"Bioinformatics and NGS data analysis"
Venue:
IRD Ouagadougou
Number of participants:
20 participants
 

Meeting objectives

The “bioinformatics and NGS data analysis” workshop was organized by the Patho-Bios International Joint Laboratory and funded by IRD, which took place from November 14 to 18 at the IRD centre in Ouagadougou.

Monday, November 14

9AM-1PM: Opening of the workshop: presentations by the trainers, participants and outline of expectations, presentation on the week’s schedule

Presentation on the Montpellier “South Green” bioinformatics platform and “C2B” collective

Workshop on introduction to genomics and bioinformatics (D. Brunel), Discussions

2PM-5PM: General introduction to bioinformatics

Tuesday, November 15

9AM-1PM: Introduction to the Galaxy environment

Application in microsatellite research and definition of primers

2PM-5PM: Introduction to the line of command and Linux environment

Wednesday, November 16

9AM-1PM: Introduction to the line of command and Linux environment

Application to phylogeny (course + tutorials)

2PM-5PM: Introduction to the NGS data analysis (raw data through mapping) (course + tutorial)

Thursday, November 17

9AM-1PM: RNA-Seq and differential analysis of genes (course + tutorial)

Variants analysis (SNPs, Indels, Structural variants) and GWA (course)

2PM-5PM: Metagenomics/barcoding (targeted metagenomics and shotgun) (course)

Friday, November 18

9AM-1PM: Parallel session 1: Metagenomics/barcoding (targeted metagenomics and shotgun) (practical exercises)

Parallel session 2: Variants analysis (SNPs, Indels, Structural variants) and GWAS (Practical exercises)

2PM-5PM: Parallel session 1: Metagenomics/barcoding (targeted metagenomics and shotgun) (practical exercises)

Parallel session 2: Variants analysis (SNPs, Indels, Structural variants ) and GWAS (practical exercises)

Assessment of the week

FINAL ROUND TABLE

A final round table was performed  to discuss how to sustain such training, which does not exist in universities in Burkina Faso, to define the needs in students and researchers bioinformatics in the International Joint Laboratory and, more broadly, institutes in Burkina Faso and to devise possible scenarios/solutions to meet these needs.

Download_Report-Roundtable19-11

   

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